A. Charvátová Campbell, Pavel Jelínek, P. Klapetek
Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
Meas. Sci. Technol. 28 (2017) 034005(1) - 034005(6).

O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
Principles and simulations of high-resolution STM imaging with a flexible tip apex
Phys. Rev. B 95 (2017) 045407(1) - 045407(9).

O. Stetsovych, M. ©vec, J. Vacek, J. Vacek Chocholouąová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
From helical to planar chirality by on-surface chemistry
Nat. Chem. 9 (2017) 213 - 218.


J. Berger, K. Ko¶mider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. ©vec, P. Jelínek
Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
J. Phys. Chem. C 120 (2016) 21955 - 21961.

N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. ©vec, P. Jelinek, I. Swart
Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
ACS Nano 10 (2016) 8517 - 8525.

J. van der Lit, F. Di Cicco, P. Hapala, P. Jelinek, I. Swart
Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
Phys. Rev. Lett. 116 (2016) 096102-1 - 096102-5.

P. Hapala, M. Svec, O. Stetsovych, N. J. van der Heijden, M. Ondracek ,J. van der Lit, P. Mutombo, I. Swart, P. Jelinek
Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
Nat. Commun. 7 (2016) 11560(1) - 11560(8).

W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
Tuning the conductance of benzene-based single-molecule junctions
Org. Electron. 34 (2016) 254 - 261.

N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
J. Am. Chem. Soc. 138 (2016) 5585 - 5593.

O. Krejčí, P. Matvija, P. Zimmermann, P. Sobotík, I. Oą»ádal, P. Kocán
Chemisorption of Acetophenone on Si(111)-7 x 7. Polar Aromatic Molecule on Electronically Complex Surface
J. Phys. Chem. C 120 (2016) 9200 - 9206.

P.Mutombo, R. Gubo, A. Berko
Interaction of Gold with a Pinwheel TiO∼1.2 Film Formed on Rh(111) Facet: STM and DFT Studies
J. Phys. Chem. C 120 (23) (2016) 12917 - 12923.

M. Ondráček, P. Hapala, P. Jelínek
Charge-state dynamics in electrostatic force spectroscopy
Nanotechnology 27 (2016) 274005(1) - 274005(13).

O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
J. Phys. Chem. Lett. 7 (2016) 1563 - 1569.

J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. ©vec, F. C. Bocquet, F. S. Tautz
Structural and Electronic Properties of Nitrogen-Doped Graphene
Phys. Rev. Lett. 116 (2016) 126805(1) - 126805(6).

J. Sforzini, M. Telychko, O. Krejčí, M. Vondráček, M. ©vec., F. C. Bocquet, F. S. Tautz
Transformation of metallic boron into substitutional dopants in graphene on 6H-SIC(0001)
Phys. Rev. B 93 (2016) 041302-1 - 041302-4.

V. Zobač, J.P. Lewis, P. Jelínek
Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
Nanotechnology 27 (2016) 285202(1) - 285202(8).


F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
Phys. Rev. Lett. 115 (2015) 076101-1 - 076101-5.

María Arroyo-Hernández, Martin ©vec, Celia Rogero, Carlos Briones, José Ángel Martín-Gago, José Luis Costa-Krämer
Structural modifications of gold thin films produced by thiol-derivatized single-stranded DNA immobilization
J. Phys.-Condens. Mat. 26 (5) (2015) 055010 - 055014.

J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. ©vec
Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
Small 11 (2015) 3686 - 3693.

M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
Charge Redistribution and Transport in Molecular Contacts
Phys. Rev. Lett. 115 (2015) 136101(1) - 136101(5).

K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
Nat. Commun. 6 (2015) 7766(1) - 7766(6).

P. Kocán, O.Krejčí, H. Tochihara
Anomalous structural evolution and √ 3 x√ 3  reconstruction of a clean Si(111) surface observed after thermal desorption of thallium
J. Vac. Sci. Technol. A 33 (2015) 021408-1 - 021408-8.

Pablo Merino, Martin ©vec, Jose Ignacio Martinez, Pingo Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, Pavel Jelinek
Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
Langmuir 31 (1) (2015) 233 - 239.

César Moreno, Oleksandr Stetsovych, Tomoko K. Shimizu, Oscar Custance
Imaging Three-Dimensional Surface Objects with Submolecular Resolution by Atomic Force Microscopy
Nano Lett. 15 (2015) 2257 - 2262.

A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelinek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
J. Phys.-Condens. Mat. 27 (2015) 134208(1) - 134208(11).

O. Romanyuk, P. Mutombo, F. Grosse
Ab initio Study of Atomic Disorder on As-rich GaAs(111)A Surface
Surf. Sci. 641 (2015) 330 - 335.

Mykola Telychko, Jan Berger, Zsolt Majzik, Pavel Jelínek, Martin ©vec
Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
Beilstein J. Nanotechnol. 6 (2015) 901 - 906.

M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. ©vec
Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
ACS Nano 9 (2015) 9180 - 9187.

Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
Nano Lett. 15 (2015) 4356 - 4363.

V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
J. Phys.-Condens. Mat. 27 (2015) 175002(1) - 175002(11).


P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
Mechanism of high-resolution STM/AFM imaging with functionalized tips
Phys. Rev. B 90 (2014) 085421(1) - 085421(9).

P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
Phys. Rev. Lett. 113 (2014) 226101(1) - 226101(5).

K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
Adv. Mater. Interf. 1 (2014) 1300042(1) - 1300042(9).

P. Merino, M. ©vec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
Nat. Commun. 5 (2014) 3054(1) - 3054(9).

P. Mutombo, O. Romanyuk
Ab initio density functional theory study of non-polar (10-10), (11-20) and semipolar {20-21} GaN surfaces
J. Appl. Phys. 115 (2014) 203508-1 - 203508-5.

J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
Initial and secondary oxidation products on the Si(111)-(7x7) surface identified by atomic force microscopy and first principles calculations
Appl. Phys. Lett. 104 (2014) 133107(1) - 133107(4).

M. Setvín, X. Hao, B. Daniel, J. Pavelec, Z. Novotny, G. S. Parkinson, M. Schmid, G. Kresse, C. Franchini, U. Diebold
Charge Trapping at the Step Edges of TiO2 Anatase (101)
Angew. Chem. Int. Ed. 53 (2014) 4714 - 4716.

E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. ©vec, Z. Majzik, A. B. McLean, P. Jelínek
Identification of Surface Defects and Subsurface Dopants in a Delta-Doped System Using Simultaneous nc-AFM/STM and DFT
J. Phys. Chem. C 118 (2014) 15744 - 15753.

M. ©vec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, V. Cháb, J. A. Martín Gago, P. Jelínek
Silicene versus two-dimensional ordered silicide: Atomic and electronic structure of Si-(√19×√19)R23.4◦/Pt(111)
Phys. Rev. B 89 (2014) 201412(1) - 201412(5).

M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. ©vec
Achieving High-Quality Single-Atom Nitrogen Doping of Graphene/SiC(0001) by Ion Implantation and Subsequent Thermal Stabilization
ACS Nano 8 (2014) 7318 - 7324.


E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
Calculation of non-adiabatic coupling vectors in a local-orbital basis set
J. Chem. Phys. 138 (2013) 154106(1) - 154106(8).

J. Berger, M. ©vec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
Characterization of the mechanical properties of qPlus sensors
Beilstein J. Nanotechnol. 4 (2013) 1 - 9.

Z. Chromcova, M. C. Tringides and Z. Chvoj
Nucleation on a stepped surface with an Ehrlich–Schwöbel barrier
J. Phys.-Condens. Mat. 25 (2013) 265003(1) - 265003(8).

P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
Phys. Rev. B 87 (2013) 195420(1) - 195420(13).

Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
ACS Nano 7 (2013) 2686 - 2692.

Z. Majzik, M.R. Tchalala, M. ©vec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
J. Phys.-Condens. Mat. 25 (2013) 225301(1) - 225301(6).

M. Maąín, L. Bergqvist, J. Kudrnovský, M. Kotrla, V. Drchal
First-principles study of thermodynamical properties of random magnetic overlayers on fcc-Cu(001) substrate
Phys. Rev. B 87 (2013) 075452(1) - 075452(8).

M. Maąín, L. Bergqvist, J. Kudrnovský, M. Kotrla, V. Drchal
Critical Temperatures of Random Iron–Cobalt Overlayers on the fcc-Cu(001) Substrate
J. Superconductivity and Novel Magnetism 26 (2013) 809 - 812.

M. Maąín, M. Kotrla, B. Yang, M. Asta, M. O. Jahma, and T. Ala-Nissila
Multiscale modeling of submonolayer growth for Fe/Mo(110)
Eur. Phys. J. B 86 (2013) 359 - 365.

P.Shukrynau, P. Mutombo, M.Hietschold V.Cháb

Appl. Surf. Sci. 270 (2013) 157 - 162.

P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Oąt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
Phys. Rev. B 88 (2013) 205406(1) - 205406(7).

Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
Phys. Rev. Lett. 111 (2013) 106803(1) - 106803(5).

Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
ACS Nano 7 (2013) 7370 - 7376.

A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
Atomic Structure Affects the Directional Dependence of Friction
Phys. Rev. Lett. 111 (2013) 126103(1) - 126103(4).

A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
Phys. Rev. B 87 (2013) 155403(1) - 155403(10).

(Total number of publications: 55)