Pavel Jelínek

Publications:

  1. N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo,M. Svec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
    On-Surface Bottom-Up Synthesis of Azine Derivatives DisplayingStrong Acceptor Behavior
    Angew. Chem. Int. Ed. 57 (2018) 8582 - 8586.

  2. J. Hellerstedt, A. Cahlík, M. Švec, B. de la Torre, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelinek
    On-surface structural and electronic properties of spontaneously formed Tb2Pc3 single molecule magnets
    Nanoscale 10 (2018) 15553 - 15563.

  3. C. Krull, M. Castelli, P. Hapala, D. Kumar, A. Tadich, M. Capsoni, M. T. Edmonds, J. Hellerstedt, S. A. Burke, P. Jelinek, A. Schiffrin
    Iron-based trinuclear metal-organic nanostructureson a surface with local charge accumulation
    Nat. Commun. 9 (2018) 3211(1) - 3211(7).

  4. B. de la Torre, M. Švec, P. Hapala, J. Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
    Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
    Nat. Commun. 9 (2018) 2831(1) - 2831(9).

  5. J. Peng, D. Cao, Z. He, J. Guo, P. Hapala, R. Ma, B. Cheng, J. Chen, W. J. Xie, X.-Zh. Li, P. Jelínek, L.-M. Xu, Y. Q. Gao, E.-G. Wang, Y. Jiang
    The effect of hydration number on the interfacial transport of sodium ions
    Nature 557 (2018) 701 - 705.

  6. J. Peng, J. Guo, P. Hapala, D. Cao, R. Ma, B. Cheng, L. Xu, M. Ondráček, P. Jelínek, E. Wang, Y. Jiang
    Weakly perturbative imaging of interfacial waterwith submolecular resolution by atomic forcemicroscopy
    Nat. Commun. 9 (2018) 122(1) - 122(7).

  7. F. Queck, O. Krejčí, P. Scheuerer, F. Bolland, M. Otyepka, P. Jelinek, J. Repp
    Bonding Motifs in Metal-Organic Compounds on Surfaces
    J. Am. Chem. Soc. 140 (2018) 12884 - 12889.

  8. J. Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
    Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
    J. Vac. Sci. Technol. A 36 (2018) 031401-1 - 031401-6.

  9. O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
    Large converse piezoelectric effect measured on a single molecule on a metallic surface
    J. Am. Chem. Soc. 140 (2018) 940 - 946.

  10. A. Charvátová Campbell, Pavel Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Meas. Sci. Technol. 28 (2017) 034005(1) - 034005(6).

  11. T. Chutora, J. Redondo, B. de la Torre, M. Švec, P. Jelínek, H. Vazquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein J. Nanotechnol. 8 (2017) 1073 - 1079.

  12. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    J. Phys.-Condens. Mat. 29 (2017) 343002(1) - 343002(18).

  13. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Phys. Rev. B 95 (2017) 045407(1) - 045407(9).

  14. B. de la Torre, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Phys. Rev. Lett. 119 (2017) 166001(1) - 166001(6).

  15. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413 - 8420.

  16. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nat. Commun. 8 (2017) 15155(1) - 15155(6).

  17. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nat. Chem. 9 (2017) 213 - 218.

  18. J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
    Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
    J. Phys. Chem. C 120 (2016) 21955 - 21961.

  19. N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelinek, I. Swart
    Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
    ACS Nano 10 (2016) 8517 - 8525.

  20. J. van der Lit, F. Di Cicco, P. Hapala, P. Jelinek, I. Swart
    Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
    Phys. Rev. Lett. 116 (2016) 096102-1 - 096102-5.

  21. P. Hapala, M. Svec, O. Stetsovych, N. J. van der Heijden, M. Ondracek ,J. van der Lit, P. Mutombo, I. Swart, P. Jelinek
    Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
    Nat. Commun. 7 (2016) 11560(1) - 11560(8).

  22. W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
    Tuning the conductance of benzene-based single-molecule junctions
    Org. Electron. 34 (2016) 254 - 261.

  23. N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
    Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
    J. Am. Chem. Soc. 138 (2016) 5585 - 5593.

  24. M. Ondráček, P. Hapala, P. Jelínek
    Charge-state dynamics in electrostatic force spectroscopy
    Nanotechnology 27 (2016) 274005(1) - 274005(13).

  25. O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
    Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
    J. Phys. Chem. Lett. 7 (2016) 1563 - 1569.

  26. J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
    Structural and Electronic Properties of Nitrogen-Doped Graphene
    Phys. Rev. Lett. 116 (2016) 126805(1) - 126805(6).

  27. V. Zobač, J.P. Lewis, P. Jelínek
    Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
    Nanotechnology 27 (2016) 285202(1) - 285202(8).

  28. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Phys. Rev. Lett. 115 (2015) 076101-1 - 076101-5.

  29. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686 - 3693.

  30. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Phys. Rev. Lett. 115 (2015) 136101(1) - 136101(5).

  31. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nat. Commun. 6 (2015) 7766(1) - 7766(6).

  32. Pablo Merino, Martin Švec, Jose Ignacio Martinez, Pingo Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, Pavel Jelinek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233 - 239.

  33. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelinek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    J. Phys.-Condens. Mat. 27 (2015) 134208(1) - 134208(11).

  34. Mykola Telychko, Jan Berger, Zsolt Majzik, Pavel Jelínek, Martin Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein J. Nanotechnol. 6 (2015) 901 - 906.

  35. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180 - 9187.

  36. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Lett. 15 (2015) 4356 - 4363.

  37. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    J. Phys.-Condens. Mat. 27 (2015) 175002(1) - 175002(11).

  38. P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
    Mechanism of high-resolution STM/AFM imaging with functionalized tips
    Phys. Rev. B 90 (2014) 085421(1) - 085421(9).

  39. P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
    Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
    Phys. Rev. Lett. 113 (2014) 226101(1) - 226101(5).

  40. K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
    Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
    Adv. Mater. Interf. 1 (2014) 1300042(1) - 1300042(9).

  41. P. Merino, M. Švec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
    Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
    Nat. Commun. 5 (2014) 3054(1) - 3054(9).

  42. J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
    Initial and secondary oxidation products on the Si(111)-(7x7) surface identified by atomic force microscopy and first principles calculations
    Appl. Phys. Lett. 104 (2014) 133107(1) - 133107(4).

  43. E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. Švec, Z. Majzik, A. B. McLean, P. Jelínek
    Identification of Surface Defects and Subsurface Dopants in a Delta-Doped System Using Simultaneous nc-AFM/STM and DFT
    J. Phys. Chem. C 118 (2014) 15744 - 15753.

  44. M. Švec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, V. Cháb, J. A. Martín Gago, P. Jelínek
    Silicene versus two-dimensional ordered silicide: Atomic and electronic structure of Si-(√19×√19)R23.4◦/Pt(111)
    Phys. Rev. B 89 (2014) 201412(1) - 201412(5).

  45. M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. Švec
    Achieving High-Quality Single-Atom Nitrogen Doping of Graphene/SiC(0001) by Ion Implantation and Subsequent Thermal Stabilization
    ACS Nano 8 (2014) 7318 - 7324.

  46. E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
    Calculation of non-adiabatic coupling vectors in a local-orbital basis set
    J. Chem. Phys. 138 (2013) 154106(1) - 154106(8).

  47. J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
    Characterization of the mechanical properties of qPlus sensors
    Beilstein J. Nanotechnol. 4 (2013) 1 - 9.

  48. P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
    Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
    Phys. Rev. B 87 (2013) 195420(1) - 195420(13).

  49. Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
    Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
    ACS Nano 7 (2013) 2686 - 2692.

  50. Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
    Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
    J. Phys.-Condens. Mat. 25 (2013) 225301(1) - 225301(6).

  51. P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
    Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
    Phys. Rev. B 88 (2013) 205406(1) - 205406(7).

  52. Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
    Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
    Phys. Rev. Lett. 111 (2013) 106803(1) - 106803(5).

  53. Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
    ACS Nano 7 (2013) 7370 - 7376.

  54. A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
    Atomic Structure Affects the Directional Dependence of Friction
    Phys. Rev. Lett. 111 (2013) 126103(1) - 126103(4).

  55. A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
    Phys. Rev. B 87 (2013) 155403(1) - 155403(10).

  56. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    J. Phys.-Condens. Mat. 24 (2012) 084001(1) - 084001(10).

  57. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein J. Nanotechnol. 3 (2012) 249 - 259.

  58. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    J. Phys.-Condens. Mat. 24 (2012) 084003(1) - 084003(7).

  59. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    J. Phys.-Condens. Mat. 24 (2012) 445003 - 445016.

  60. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969 - 6976.

  61. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Phys. Rev. B 86 (2012) 121407(R) - 121412(R).

  62. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelinek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Phys. Rev. B 85 (2012) 125416(1) - 125416(9).

  63. A. Campbellová, M. Ondráček, P. Pou, R. Pérez, P. Klapetek, P. Jelínek
    'Sub-atomic' resolution of non-contact atomic force microscope images induced by a heterogeneous tip structure: a density functional theory study
    Nanotechnology 22 (2011) 295710(1) - 295710(7).

  64. J.P. Lewis, P. Jelínek, J. Ortega, A.A. Demkov, D.G. Trabada, B. Haycock, H. Wang, G. Adams, J.K. Tomfohr, E. Abad, H. Wang, D.A. Drabold
    Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism
    phys. status solidi b 248 (2011) 1989 - 2007.

  65. Z. Majzik, W. Kamiński, A.J. Weymouth, M. Vondráček, V. Zobač, M. Švec, A. Berkó, A.B. McLean, K.C. Prince, P. Jelínek, and V. Cháb
    An Investigation of Ethylene Attachment to Si(111)–7 x 7 in the Restatom–Adatom Bridging Geometry: Electronic and Vibrational Properties
    J. Phys. Chem. C 115 (2011) 21791 - 21799.

  66. M. Ondráček, P. Pou, V. Rozsíval, C. González, P. Jelínek, R. Pérez
    Forces and Currents in Carbon Nanostructures: Are We Imaging Atoms?
    Phys. Rev. Lett. 106 (2011) 176101(1) - 176101(4).

  67. M. Ternes, C. González, Ch. P. Lutz, P. Hapala, F.J. Giessibel, P. Jelínek, A.J. Heinrich
    Interplay of Conductance, Force, and Structural Change in Metallic Point Contacts.
    Phys. Rev. Lett. 106 (2011) 016802(1) - 016802(4).

  68. W. Kaminski, W. Rozsíval, P. Jelínek
    Theoretical study of electronic and transport properties of PPy-Pt(111) and PPy-C(111):H interfaces
    J. Phys.-Condens. Mat. 22 (2010) 045003(1) - 045003(10).

  69. S. Lindsay, J. He, O. Sankey, P. Hapala, P. Jelínek, P. Zhang, S.Chang, S. Huang
    Recognition tunneling
    Nanotechnology 21 (2010) 262001(1) - 262001(12).

  70. C.Sánchez-Sánchez, C.González, P.Jelínek, J.Méndez, P.L.deAndres, J.A. Martín-Gago, M.F. López
    Understanding atomic-resolved STM images on TiO.2.(110)-(1x1) surface by DFT calculations.
    Nanotechnology 21 (2010) 405702(1) - 405702(10).

  71. R. Bechstein, C. González, J. Schütte, P. Jelínek, R. Pérez, A. Kühnle
    'All-inclusive' imaging of the rutile TiO.2.(110) surface using NC-AFM.
    Nanotechnology 20 (2009) 505703(1) - 505703(7).

  72. K. Košmider, A. Krupski, P.Jelínek, L. Jurczyszyn
    Atomic and electronic properties of the Pb/Mo(110) adsorption system.
    Phys. Rev. B 80 (2009) 115424(1) - 115424(7).

  73. P. Pou, S.A. Ghasemi, P. Jelínek, T. Lenosky, S. Goedecker, R. Perez
    Structure and stability of semiconductor tip apexes for atomic force microscopy.
    Nanotechnology 20 (2009) 264015-1 - 264015-10.

  74. S. Sadewasser, P.Jelínek, Ch.K. Fang, O.Custance, Y. Yamada, Y.Sugimoto, M.Abe, S.Morita
    New Insights on Atomic-Resolution Frequency-Modulation Kelvin-Probe Force-Microscopy Imaging of Semiconductors.
    Phys. Rev. Lett. 103 (2009) 266103(1) - 266103(4).

  75. M. Švec, V. Dudr, M. Vondráček, P. Jelínek, P. Mutombo, V. Cháb, F. Šutara, V. Matolín, K. Prince
    Intra-atomic charge re-organization at the Pb Si interface: Bonding mechanism at low cover.
    Surf. Sci. 603 (2009) 2861 - 2869.

  76. H. Vázquez, P.Jelínek, M. Brandbyge, A.P. Jauho, F. Flores
    Corrections to the density-functional theory electronic spectrum: copper phthalocyanine.
    Appl. Phys. A-Mater. 95 (2009) 257 - 263.

  77. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    Ab initio study of evolution of mechanical and transport properties of clean and contaminated Au nanowires along the deformation path.
    Phys. Rev. B 77 (2008) 115447(1) - 115447(11).

  78. P.Jelínek, M. Švec, P. Pou, R. Perez, V. Cháb
    Tip-Induced Reduction of the Resonant Tunneling Current on Semiconductor Surfaces.
    Phys. Rev. Lett. 101 (2008) 176101(1) - 176101(4).

  79. B. Pieczyrak, C. González, P. Jelínek, R. Peréz, J. Ortega, F. Flores
    Mechanical and electrical properties of stretched clean and H-contaminated Pd-nanowires.
    Nanotechnology 19 (2008) 335711(1) - 335711(8).

  80. Y.Sugimoto, P. Pou, O. Custance, P. Jelínek, M. Abe, R. Perez, S. Morita
    Complex Patterning by Vertical Interchange Atom Manipulation Using Atomic Force Microscopy.
    Science 322 (2008) 413 - 417.

  81. M. Švec, P. Jelínek, P. Shukrynau, C. González, V. Cháb, V. Drchal
    Local atomic and electronic structure of the Pb/Si(111) mosaic phase: STM and ab initio study.
    Phys. Rev. B 77 (2008) 125104(1) - 125104(8).

  82. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Comput Mater Sci 39 (2007) 759 - 766.

  83. Y.Sugimoto, P.Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Phys. Rev. Lett. 98 (2007) 106104-1 - 106104-4.

  84. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64 - 67.

  85. P.Jelínek, R.Pérez, J.Ortega, F.Flores
    Hydrogen dissociation over Au nanowires and the fractional conductance quantum
    Phys. Rev. Lett. 96, č.4 (2006) 046803/1 - 046803/4.

  86. N.Oyabu, P.Pou, Y.Sugimoto, P.Jelínek, M.Abe, S.Morita, R.Pérez, Ó.Custance
    Single atomic contact adhesion and dissipation in dynamic force microscopy
    Phys. Rev. Lett. 96 č.10 (2006) 106101/1 - 106101/4.

  87. Y.Sugimoto, P.Pou, O.Custance, P.Jelínek, S.Morita, R.Peréz, M.Abe.
    Real topography, atomic relaxations and short-range chemical interactions in atomic force microscopy: The case of the α-Sn/Si(111)-(√3 x √3) R30o surface.
    Phys. Rev. B 73 (2006) 205329-1 - 205329-9.

  88. J. M. Blanco, C. González, P. Jelínek, J. Ortega, F. Flores, R. Pérez, M. Rose, M. Salmeron, J. Méndez, J. Wintterlin, G. Ertl
    Origin of contrast in STM images of oxygen on Pd(111) and its dependence on tip structure and tunneling parameters
    Phys. Rev. B 71 (2005) 113402(1) - 113402(4).

  89. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    Universal behaviour in the final stage of the breaking process for metal nanowires
    Nanotechnology 16 (2005) 1023 - 1028.

  90. P. Jelínek, H. Wang, J. P. Lewis, O.F. Sankey, J.Ortega
    Multicenter approach to the exchange-correlation interactions in ab initio tight-binding methods
    Phys. Rev. B 71 (2005) 235101(1) - 235101(9).

  91. J. M. Blanco, C. Gonzáles, P. Jelínek, J. Ortega, F. Flores, R. Peréz
    First-principles simulations of STM images: From tuneling to the contact regime.
    Phys. Rev. B 70 (2004) 85405

  92. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23.

  93. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291.

  94. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136.

  95. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347.

  96. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403

  97. M. Mašín, Z. Chvoj, P. Jelínek, J. Heinonen
    Monte-Carlo simulation of the diffusion in a two barriers system.
    Surf. Sci. 516 (2002) 169 - 178.