Pavel Jelínek

Publications:

  1. E. Pérez-Elvira, M. Lozano, Q. Huang, J. Ma,* A. Gallardo, A. Barragán, K. Lauwaet, J. M. Gallego, R. Miranda, P. Jelínek, D. Écija, D. Soler-Polo, X. Feng, J. I. Urgel
    Reactivity and Magnetic Coupling of Triangulene Dimers Linked via para-Biphenyl Units
    Angew. Chem. Int. Ed. n/a (2025) 202501874(1) - 202501874(6).

  2. A. Pinar Solé, M. Kumar, D. Soler Polo, O. Stetsovych, P. Jelínek
    Nickelocene SPM tip as a molecular spin sensor
    J. Phys.-Condens. Mat. 37 (2025) 095802-1 - 095802-11.

  3. F. Villalobos, J. Berger, A. Matěj, R. Nieman, A. Sánchez-Grande, D. Soler, A. Pinar Solé, H. Lischka, M. Matoušek, J. Brabec, L. Veis, A. Millan, C. Sánchez-Sánchez, A. G. Campaña, J. M. Cuerva, P. Jelínek
    Globally aromatic odd-electron π-magnetic macrocycle
    Chem 11 (2025) 1 - 9.

  4. A. Aguirre, A. Pinar Solé, D. Soler Polo, C. González-Orellana, A. Thakur, J. Ortuzar, O. Stesovych, M. Kumar, M. Peña-Díaz, A. Weber, M. Tallarida, J. Dai, J. Dreiser, M. Muntwiler, C. Rogero, J. I. Pascual, P. Jelínek, M. Ilyn, M. Corso
    Ferromagnetic Order in 2D Layers of Transition Metal Dichlorides
    Adv. Mater. 36 (2024) 2402723(1) - 2402723(7).

  5. C. G. Ayani, M. Bosnar, F. Calleja, A. P. Solé, O. Stetsovych, I. M. Ibarburu, C. Rebanal, M. Garnica, R. Miranda, M. M. Otrokov, M. Ondráček, P. Jelínek, A. Arnau, A. L. V. de Parga
    Unveiling the Interlayer Interaction in a 1H/1T TaS2 van der Waals Heterostructure
    Nano Lett. 24 (2024) 10805 - 10812.

  6. A. Berdonces-Layunta, A. Matěj, A. Jiménez-Martín, J. Lawrence, M.S.G. Mohammed, T. Wang, B. Mallada, B. de la Torre, A. Martínez, M. Vilas-Varela, R. Nieman, H. Lischka, D. Nachtigallová, D.Peña, P. Jelínek, D. G. de Oteyza
    The effect of water on gold supported chiral graphene nanoribbons: rupture of conjugation by an alternating hydrogenation pattern
    Nanoscale 16 (2024) 734 - 741.

  7. K. Biswas, Q. Chen, S. Obermann, J. Ma, D. Soler‐Polo, J. Melidonie, A. Barragán, A. Sánchez‐Grande, K. Lauwaet, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    On‐Surface Synthesis of Non‐Benzenoid Nanographenes Embedding Azulene and Stone‐Wales Topologies
    Angew. Chem. Int. Ed. 63 (2024) e2023181-1

  8. K. Biswas, J. Janeiro, A. Gallardo, M. Lozano, A. Barragán, B. Álvarez, D. Soler-Polo, O. Stetsovych, A. Pinar Solé, K. Lauwaet, J. M. Gallego, D. Pérez, R. Miranda, J. I. Urgel, P. Jelínek, D. Peña, D. Écija
    Designing highly delocalized solitons by harnessing the structural parity of π-conjugated polymers
    Nature Syn. 111 (2024) 12 - 21.

  9. A. Cahlík, M. Ondráček, Ch. Wäckerlin, A. Pinar Solé, O. Siri, M. Švec, P. Jelínek
    Light-Controlled Multiconfigurational Conductance Switching in a Single 1D Metal-Organic Wire
    ACS Nano 18 (2024) 9576 - 9583.

  10. A. Calvo-Fernández, M. Kumar, D. Soler-Polo, A. Eiguren, M. Blanco-Rey, P. Jelínek
    Theoretical model for multiorbital Kondo screening in strongly correlated molecules with several unpaired electrons
    Phys. Rev. B 110 (2024) 165113(1) - 165113(14).

  11. F. Frezza, A. Matěj, A. Sánchez-Grande, M. Carrera, P. Mutombo, M. Kumar, D. Curiel, P. Jelínek
    On-Surface Synthesis of a Radical 2D Supramolecular Organic Framework
    J. Am. Chem. Soc. 146 (2024) 3531 - 3538.

  12. F. Frezza, A. Sánchez-Grande, S. Canola, A. Lamancová, P. Mutombo, Q. Chen, Ch. Wäckerlin, K.-H. Ernst, M. Muntwiler, N. Zema, M. Di Giovannantonio, D. Nachtigallová, P. Jelínek
    Controlling On-Surface Photoactivity: The Impact of π-Conjugation in Anhydride-Functionalized Molecules on a Semiconductor Surface
    Angew. Chem. Int. Ed. 63 (2024) e202405983(1)

  13. M. Gabarics, B. Mallada, S. Edalatmanesh, A. Jiménez-Martín, M. Pykal, M. Ondráček, P. Kührová, W. B. Struwe, P. Banáš, S. Rauschenbach, P. Jelínek, B. de la Torre
    Atomically resolved imaging of the conformations and adsorption geometries of individual β-cyclodextrin with non-contact AFM
    Nat. Commun. 15 (2024) 9482(1) - 9482(7).

  14. A. Jiménez-Martín, Z.Sosnová, D. Soler, B. Mallada, H. González-Herrero, Sh. Edalatmanesh, N. Martín, D. Écija, P. Jelínek, B. de la Torre
    Atomically Precise Control of Topological State Hybridization in Conjugated Polymers
    ACS Nano 18 (2024) 29902 - 29912.

  15. A. Pinar Solé, J. Klívar, M. Šámal, I. G. Stará, I. Starý, J. I. Mendieta-Moreno, K.-H. Ernst, P. Jelínek, O. Stetsovych
    On-Surface Synthesis of Helicene Oligomers
    Chem. Eur. J. 30 (2024) e202304127

  16. Sh. Song, A. Pinar, A. Matěj, G. Li, O. Stetsovych, D. Soler, H. Yang, M. Telychko, J. Li, M. Kumar, Q. Chen, Sh. Edalatmanesh, J. Brabec, L. Veis, J. Wu, P. Jelinek, J. Lu
    Highly entangled polyradical nanographene with coexisting strong correlation and topological frustration
    Nat. Chem. 16 (2024) 938 - 944.

  17. G. Tajuelo-Castilla, J.I. Mendieta-Moreno, M. Accolla, J.M. Sobrado, S. Canola, P. Jelínek, G.J. Ellis, J.Á. Martín-Gago, G. Santoro
    Photocleavage of Aliphatic C–C Bonds in the Interstellar Medium
    ApJ 965 (2024) 184-1 - 184-20.

  18. J. I. Urgel, A. Sánchez-Grande, D. J. Vicent, P. Jelínek, N. Martín, D. Écija
    On-Surface Covalent Synthesis of Carbon Nanomaterials by Harnessing Carbon gem-Polyhalides
    Adv. Mater. 36 (2024) 2402467(1) - 2402467(17).

  19. L. Wang, X. Peng, J. Su, J. Wang, A. Gallardo, H. Yang, Q. Chen, P. Lyu, P. Jelínek, J. Liu, M.W. Wong, J. Lu
    Highly Selective On-Surface Ring-Opening of Aromatic Azulene Moiety
    J. Am. Chem. Soc. 146 (2024) 1563 - 1571.

  20. R. Zuzak, M. Kumar, O. Stoica, D. Soler-Polo, J. Brabec, K. Pernal, L. Veis, R. Blieck, A. M. Echavarren, P. Jelínek, S. Godlewski
    On-Surface Synthesis and Determination of the Open-Shell Singlet Ground State of Tridecacene
    Angew. Chem. Int. Ed. 63 (2024) 202317091(1) - 202317091(8).

  21. K. Biswas, D. Soler, S. Mishra, Q. Chen, X. Yao, A. Sánchez-Grande, K. Eimre, P. Mutombo, C. Martín-Fuentes, K. Lauwaet, J. M. Gallego, P. Ruffieux, C. A. Pignedoli, K. Müllen, R. Miranda, J. I. Urgel, A. Narita, R. Fasel, P. Jelínek, D. Écija
    Steering Large Magnetic Exchange Coupling in Nanographenes near the Closed-Shell to Open-Shell Transition
    J. Am. Chem. Soc. 145 (2023) 2968 - 2974.

  22. F. Frezza, A. Sánchez-Grande, M. Ondráček, M. Vondráček, Q. Chen, O. Stetsovych, V. Villalobos-Vilda, E. Tosi, F. J. Palomares, M. F. López, C. Sánchez-Sánchez, K.-H. Ernst, J. A. Martín-Gago, J. Honolka, P. Jelínek
    Epitaxial growth and characterization of SnSe phases on Au(111)
    J. Phys.-Condens. Mat. 35 (2023) 335001(1) - 335001(9).

  23. F. Frezza, F. Schiller, A. Cahlík, J. E. Ortega, J. V. Barth, A. Arnau, M. Blanco-Rey, P. Jelínek, M. Corso, I. Piquero-Zulaica
    Electronic band structure of 1D π–d hybridized narrow-gap metal–organic polymers
    Nanoscale 15 (2023) 2285 - 2291.

  24. P. Jelínek
    Quantum spin chains go organic
    Nat. Chem. 15 (2023) 12 - 13.

  25. A. Jimenez-Martın, F. Villalobos, B. Mallada, S. Edalatmanesh, A. Matěj, J. M. Cuerva, P. Jelínek, A. G. Campana, B. de la Torre
    On-surface synthesis of non-benzenoid conjugated polymers by selective atomic rearrangement of ethynylarenes
    Chem. Sci. 14 (2023) 1403 - 1412.

  26. B. Mallada, M. Ondráček, M. Lamanec, A. Gallardo, A. Jiménez-Martín, B. de la Torre, P. Hobza, P. Jelínek
    Visualization of π-hole in molecules by means of Kelvin probe force microscopy
    Nat. Commun. 14 (2023) 4954 - 4954 .

  27. I. Palaci, M. Moreno, A. Nanez, A. Purwidyantri, T. Domingues, P. D. Cabral, J. Borme, M. Marciello, J. I. Mendieta-Moreno, B. Torres-Vazquez, J. I. Martínez, M. F. Lopez, M. García-Hernandez, L. Vazquez, P. Jelínek, P. Alpuim, C. Briones, J. A. Martín-Gago
    Attomolar detection of hepatitis C virus core protein powered by molecular antenna-like effect in a graphene field-effect aptasensor
    Biosens. Bioelectron. 222 (2023) 115006(1) - 115006(8).

  28. E. Pérez-Elvira, A. Barragán, Q. Chen, D. Soler-Polo, A. Sánchez-Grande, D. J. Vicent, K. Lauwaet, J. Santos, P. Mutombo, J. I. Mendieta-Moreno, B. de la Torre, J. M. Gallego, R Miranda, N. Martín, P. Jelínek, J. I. Urgel, D. Écija
    Generating antiaromaticity in polycyclic conjugated hydrocarbons by thermally selective skeletal rearrangements at interfaces
    Nature Syn. 1 (2023) 1005 - 1016.

  29. E. C. Rascon, A. Riss, A. Matěj, A. Wiengarten, P. Mutombo, D. Soler, P. Jelínek, W. Auwärter
    On-Surface Synthesis of Square-Type Porphyrin Tetramers with Central Antiaromatic Cyclooctatetraene Moiety
    J. Am. Chem. Soc. 145 (2023) 967 - 977.

  30. T. Wang, P. Angulo-Portugal, A. Berdonces-Layunta, A. Jancarik, A. Gourdon, J. Holec, M. Kumar, D. Soler, P. Jelinek, D. Casanova, M. Corso, D. G. de Oteyza, J. P. Calupitan
    Tuning the Diradical Character of Pentacene Derivatives via Non-Benzenoid Coupling Motifs
    J. Am. Chem. Soc. 145 (2023) 10333 - 10341.

  31. X. Wu, B. Borca, S. Sen, S. Koslowski, S. Abb, D.P. Rosenblatt, A. Gallardo, J.I. Mendieta-Moreno, M. Nachtigall, P. Jelinek, S. Rauschenbach, K. Kern, U. Schlickum
    Molecular sensitised probe for amino acid recognition within peptide sequences
    Nat. Commun. 14 (2023) 8335-1 - 8335-8.

  32. K. Biswas, M. Urbani, A. Sánchez Grande, D. Soler Polo, K. Lauwaet, A. Matěj, P. Mutombo, L. Veis, J. Brabec, K. Pernal, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, T. Torres, J.I. Urgel
    Interplay between π-Conjugation and Exchange Magnetism in One-Dimensional Porphyrinoid Polymers
    J. Am. Chem. Soc. 144 (2022) 12725 - 12731.

  33. K. Biswas, J.I. Urgel, M. R. Ajayakumar, J.Ma, A. Sánchez-Grande, Sh. Edalatmanesh, K. Lauwaet, P. Mutombo, J.M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    Synthesis and Characterization of peri-Heptacene on a Metallic Surface
    Angew. Chem. Int. Ed. 61 (2022) e2021149-1

  34. K. Biswas, L. Yang, J. Ma, A. Sánchez-Grande, Q. Chen, K. Lauwaet, J. M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    Defect-Induced π-Magnetism into Non-Benzenoid Nanographenes
    Nanomaterials 12 (2022) 12020224(1) - 12020224(9).

  35. E. Do, J.W. Park, O. Stetsovych, P. Jelinek, H. Woong
    Z3 Charge Density Wave of Silicon Atomic Chains on a Vicinal Silicon Surface
    ACS Nano 16 (2022) 6598 - 6604.

  36. F. Evers,A. Aharony,N. Bar-Gill,O. Entin-Wohlman,P. Hedegård,O. Hod,P. Jelinek,G. Kamieniarz,M. Lemeshko,K. Michaeli,V. Mujica,R. Naaman,Y. Paltiel,S. Refaely-Abramson,O. Tal,J. Thijssen,M. Thoss,J.M. van Ruitenbeek,L. Venkataraman,D. H. Waldeck,B. Yan,L. Kronik
    Theory of Chirality Induced Spin Selectivity: Progress and Challenges
    Adv. Mater. 34, (2022) 2106629(1) - 2106629(11).

  37. H. Fang, A. Gallardo, D. Dulal, Zh. Qiu, J. Su, M. Telychko, H. Mahalingam, P. Lyu, Y. Han, Y. Zheng, Y. Cai, A. Rodin, P. Jelínek, J. Lu
    Electronic Self-Passivation of Single Vacancy in Black Phosphorus via Ionization
    Phys. Rev. Lett. 128 (2022) 176801(1) - 176801(6).

  38. J. Lawrence, A. Berdonces-Layunta, Sh. Edalatmanesh, J. Castro-Esteban, T. Wang, A. Jimenez-Martin, B. de la Torre, R. Castrillo-Bodero, P. Angulo-Portugal, M.S.G. Mohammed, A. Matěj, M. Vilas-Varela, F. Schiller, M. Corso, P. Jelinek, D. Peña, D.G. de Oteyza
    Circumventing the stability problems of graphene nanoribbon zigzag edges
    Nat. Chem. 14 (2022) 1451 - 1458 .

  39. X. Liu, A. Matej, T. Kratky, J.I. Mendieta-Moreno, S. Günther, P. Mutombo, S. Decurtins, U. Aschauer, J. Repp, P. Jelinek, Sh. Liu, L.L. Patera
    Exploiting Cooperative Catalysis for the On-surface Synthesis ofLinear Heteroaromatic Polymers via Selective C-H Activation
    Angew. Chem. Int. Ed. 61 (2022) e20211279(1)

  40. B. Lowe, J. Hellerstedt, A. Matěj, P. Mutombo, D. Kumar, M. Ondráček, P. Jelínek, A. Schiffrin
    Selective Activation of Aromatic C−H Bonds Catalyzed by Single Gold Atoms at Room Temperature
    J. Am. Chem. Soc. 144 (2022) 21389 - 21397.

  41. B. Mallada, Q. Chen, T. Chutora, A. Sánchez-Grande, B. Cirera, J. Santos, N. Martín, D. Ecija, P. Jelínek, B. de la Torre
    Resolving Atomic-Scale Defects in Conjugated Polymers On-Surfaces
    Chem. Eur. J. 28 (2022) 1 - 9.

  42. J. I. Mendieta-Moreno, B. Mallada,B. de la Torre, T. Cadart, M. Kotora, P. Jelinek
    Unusual Scaffold Rearrangement in Polyaromatic Hydrocarbons Driven by Concerted Action of Single Gold Atoms on a Gold Surface
    Angew. Chem. Int. Ed. 61 (2022) e202208010-1

  43. J.W. Park, E. Do, J.S. Shin, S. K. Song, O. Stetsovych, P. Jelinek, H.W.Yeom
    Creation and annihilation of mobile fractional solitons in atomic chains
    Nature Nanotech. 17 (2022) 244 - 249.

  44. M. Telychko, Sh. Edalatmanesh, K. Leng, I. Abdelwahab, N. Guo, Ch. Zhang, J.I. Mendieta-Moreno, M. Nachtigall, J. Li, K.P. Loh, P. Jelínek, J. Lu
    Sub-angstrom noninvasive imaging of atomic arrangement in 2D hybrid perovskites
    Science Advances 8 (2022) eabj0395(1)

  45. Ch. Wäckerlin, A. Cahlík, J. Goikoetxea, O. Stetsovych, D. Medvedeva, J. Redondo, M. Švec, B. Delley, M. Ondráček, A. Pinar, M. Blanco-Rey, J. Kolorenč, A. Arnau, P. Jelínek
    Role of the Magnetic Anisotropy in Atomic-Spin Sensing of 1D Molecular Chains
    ACS Nano 16 (2022) 16402 - 16413.

  46. Zh. Zeng, D. Guo, T. Wang, Q. Chen, A. Matěj, J. Huang, D. Han, Q. Xu, A. Zhao, P. Jelínek, D.G. de Oteyza, J.-S. McEwen, J. Zhu
    Chemisorption-Induced Formation of Biphenylene Dimer on Ag(111)
    J. Am. Chem. Soc. 144 (2022) 723 - 732.

  47. A. Berdonces-Layunta, J. Lawrence, Sh. Edalatmanesh, J. Castro-Esteban, T. Wang, M.S.G. Mohammed, L. Colazzo, D. Peña, P. Jelínek, D. G. de Oteyza
    Chemical Stability of (3,1)-Chiral Graphene Nanoribbons
    ACS Nano 15 (2021) 5610 - 5617.

  48. K. Biswas, J.I. Urgel, K. Xu, J. Ma, A. Sánchez‐Grande, P. Mutombo, A. Gallardo, K. Lauwaet, B. Mallada, B. de la Torre, A. Matěj, J. M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    On‐Surface Synthesis of a Dicationic Diazahexabenzocoronene Derivative on the Au (111) Surface
    Angew. Chem. Int. Ed. 60 (2021) 25551 - 25556.

  49. A. Cahlík,J. Hellerstedt, Jesús I. Mendieta-Moreno, M. Švec, V. Santhini, S. Pascal, Diego Soler-Polo, S. I. Erlingsson, K. Výborný, P. Mutombo, O. Marsalek, O. Siri, P. Jelínek
    Significance Of Nuclear Quantum Effects In Hydrogen Bonded Molecular Chains
    ACS Nano 15 (2021) 10357 - 10365.

  50. Borja Cirera, Alexander Riss, Pingo Mutombo, José I. Urgel, José Santos, Marco di Giovannantonio, Roland Widmer, Samuel Stolz, Qiang Sun, Max Bommert, Roman Fasel, Pavel Jelinek, Willi Auwaerter, Nazarjo Martín, David Écija
    On-Surface Synthesis of Organocopper Metallacycles through Activation of Inner Diacetylene Moieties
    Chem. Sci. 12 (2021) 12806 - 12811.

  51. H. González-Herrero,J. I. Mendieta-Moreno,Sh. Edalatmanesh,J. Santos,N. Martín,D. Écija, B. de la Torre,P. Jelinek,
    Atomic Scale Control and Visualization of Topological Quantum Phase Transition in π-Conjugated Polymers Driven by Their Length
    Adv. Mater. 33 (2021) 2104495(1) - 2104495(9).

  52. B. Mallada, P. Błoński, R. Langer, P. Jelínek, M. Otyepka, B. de la Torre
    On-Surface Synthesis of One-Dimensional Coordination Polymers with Tailored Magnetic Anisotropy
    ACS Applied Materials and Interfaces 13 (2021) 32393 - 32401.

  53. B. Mallada, A. Gallardo, M. Lamanec, B. de la Torre, V. Špirko, P. Hobza, P. Jelinek
    Real-space imaging of anisotropic charge of σ-hole by means of Kelvin probe force microscopy
    Science 374 (2021) 863 - 867.

  54. B. Mallada, B. de la Torre, J. I. Mendieta-Moreno, D. Nachtigallová, A. Matěj, M. Matoušek, P. Mutombo, J. Brabec, L. Veis, T. Cadart, M. Kotora, P. Jelínek
    On-Surface Strain-Driven Synthesis of Nonalternant Non-Benzenoid Aromatic Compounds Containing Four- to Eight-Membered Rings
    J. Am. Chem. Soc. 143 (2021) 14694 - 14702.

  55. Cristina Martín-Fuentes, José I. Urgel, Shayan Edalatmanesh, Eider Rodríguez-Sánchez, José Santos, Pingo Mutombo, Kalyan Biswas, Koen Lauwaet, José M. Gallego, Rodolfo Miranda, Pavel Jelínek, Nazario Martín, David Écija
    Cumulene-like Bridged Indeno[1,2-b]Fluorene p-Conjugated Polymers Synthesized on Metal Surfaces
    Chem. Commun. 57 (2021) 7545 - 7548.

  56. X. Peng, H. Mahalingam, Sh. Dong, P. Mutombo, J. Su, M. Telychko, Sh. Song, P. Lyu, P.W. Ng, J. Wu, P. Jelínek, Ch. Chi, A. Rodin, J. Lu
    Visualizing designer quantum states in stable macrocycle quantum corrals
    Nat. Commun. 12 (2021) 5895-1 - 5895-9.

  57. A. Sánchez-Grande, J.I. Urgel, L. Veis, Sh. Edalatmanesh, J. Santos, K. Lauwaet, P. Mutombo, J.M. Gallego, J. Brabec, P. Beran, D. Nachtigallová, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Unravelling the Open-Shell Character of Peripentacene on Au(111)
    J. Phys. Chem. Lett. 12 (2021) 330 - 336.

  58. V. M. Santhini, O. Stetsovych, M. Ondráček, J. I. Mendieta Moreno, P. Mutombo, B. de la Torre, M. Švec, J. Klívar, I. G. Stará, H. Vázquez, I. Starý, P. Jelínek
    On-Surface Synthesis of Polyferrocenylene and its Single-Chain Conformational and Electrical Transport Properties
    Adv. Funct. Mater. 31 (2021) 2006391(1) - 2006391(11).

  59. V. M. Santhini, Ch. Wäckerlin, A. Cahlík, M. Ondráček, S. Pascal, A. Matěj, O. Stetsovych, P. Mutombo, P. Lazar, O. Siri, P. Jelínek
    1D Coordination π–d Conjugated Polymers with Distinct Structures Defined by the Choice of the Transition Metal: Towards a New Class of Antiaromatic Macrocycles
    Angew. Chem. Int. Ed. 60 (2021) 439 - 445.

  60. J. Su, W. Fan, P. Mutombo, X. Peng, Sh. Song, M. Ondráček, P. Golub, J. Brabec, L. Veis, M. Telychko, P. Jelínek, J. Wu, J. Lu
    On-Surface Synthesis and Characterization of [7]Triangulene Quantum Ring
    Nano Lett. 21 (2021) 861 - 867.

  61. M. Telychko, G. Li, P. Mutombo, D. Soler-Polo, X. Peng, J. Su, Sh. Song, M. Joo Koh, M. Edmonds, P. Jelínek, J. Wu, J. Lu
    Ultrahigh-yield on-surface synthesis and assembly of circumcoronene into a chiral electronic Kagome-honeycomb lattice
    Science Advances 7 (2021) eabf0269-1

  62. M. Žonda, O. Stetsovych, R. Korytár, M. Ternes, R. Temirov, A. Raccanelli, F.S.Tautz, P. Jelínek, T. Novotný, M. Švec
    Resolving Ambiguity of the Kondo Temperature Determination in Mechanically Tunable Single-Molecule Kondo Systems
    J. Phys. Chem. Lett. 12 (2021) 6320 - 6325.

  63. J. Berger, M. Ondráček, O. Stetsovych, P. Malý, P. Holý, J. Rybáček, M. Švec, I.G. Stará, T. Mančal, I. Starý, P. Jelínek
    Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
    Nat. Commun. 11 (2020) 1337-1 - 1337-10.

  64. K. Biswas, J.I. Urgel, A. Sánchez-Grande, Sh. Edalatmanesh, J. Santos, B. Cirera, P. Mutombo, K. Lauwaet, R. Miranda, P. Jelínek, N. Martín, D. Écija
    On-surface synthesis of doubly-linked one-dimensional pentacene ladder polymers
    Chem. Commun. 56 (2020) 15309 - 15312.

  65. B. Cirera, A. Sánchez-Grande, B. de la Torre, J. Santos, Sh. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, B. Mallada, R. Zbořil, R. Miranda, O. Gröning, P. Jelínek, N. Martín, D. Ecija
    Tailoring topological order and π-conjugation to engineer quasi-metallic polymers
    Nature Nanotech. 15 (2020) 437 - 443.

  66. J. Doležal, P. Mutombo, D. Nachtigallova, P. Jelinek, P. Merino, M. Švec
    Mechano-Optical Switching of a Single Molecule with Doublet Emission
    ACS Nano 14 (2020) 8931 - 8938.

  67. B. de la Torre, A. Matěj, A. Sánchez-Grande, B. Cirera, B. Mallada, E. Rodríguez-Sánchez, J. Santos, J.I. Mendieta-Moreno, Sh. Edalatmanesh, K. Lauwaet, M. Otyepka, M. Medveď, Á. Buendía, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Tailoring π-conjugation and vibrational modes to steer on-surface synthesis of pentalene-bridged ladder polymers
    Nat. Commun. 11 (2020) 4567(1) - 4567(8).

  68. B. Mallada, Sh. Edalatmanesh, P. Lazar,J. Redondo, A. Gallardo, R. Zbořil, P. Jelínek, M. Švec, B. de la Torre
    Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene
    ACS Sustain. Chem. Eng. 8 (2020) 3437 - 3444.

  69. T. Michnowicz, B. Borca, R. Pétuya, V. Schendel, M. Pristl, I. Pentegov, U. Kraft, H. Klauk, P. Wahl, P. Mutombo, P. Jelínek, A. Arnau, U. Schlickum, K. Kern
    Controlling Single Molecule Conductance by a Locally Induced Chemical Reaction on Individual Thiophene Units
    Angew. Chem. Int. Ed. 59 (2020) 6207 - 6212.

  70. M.S.G. Mohammed, L. Colazzo, A. Gallardo, J.A. Pomposo, P. Jelínek, D.G. de Oteyza
    Steering alkyne homocoupling with on-surface synthesized metal–organic complexes
    Chem. Commun. 56 (2020) 8659 - 8662.

  71. P. Procházka, M. A. Gosalvez, L. Kormoš, B. de la Torre, A. Gallardo, J. Alberdi-Rodriguez, T. Chutora, A. O. Makoveev, A. Shahsavar, A. Arnau, P. Jelínek, J. Čechal
    Multiscale Analysis of Phase Transformations in Self-Assembled Layers of 4,4′-Biphenyl Dicarboxylic Acid on the Ag(001) Surface
    ACS Nano 14 (2020) 7269 - 7279.

  72. A. Sánchez-Grande, J.I. Urgel, A. Cahlík, J. Santos, Sh. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, P. Mutombo, D. Nachtigallová, R. Nieman, H. Lischka, B. de la Torre, R. Miranda, O. Gröning, N. Martín, P. Jelínek, D. Écija
    Diradical organic one‐dimensional polymers synthesized on a metallic surface
    Angew. Chem. Int. Ed. 59 (2020) 17594 - 17599 .

  73. D. Sen, P. Blonski, B. de la Torre, P. Jelínek, M. Otyepka
    Thermally induced intra-molecular transformation and metalation of free-base porphyrin on Au(111) surface steered by surface confinement and ad-atoms
    Nanoscale Adv. 2 (2020) 2986 - 2991.

  74. Ch. Wäckerlin, A. Gallardo, A. Mairena, M. Baljozovic, A. Cahlík, A. Antalík, J. Brabec, L. Veis, D. Nachtigallova, P. Jelinek, K.-H. Ernst
    On-Surface Hydrogenation of Buckybowls: From Curved Aromatic Molecules to Planar Non-Kekulé Aromatic Hydrocarbons
    ACS Nano 14 (2020) 16735 - 16742.

  75. T. Chutora, B. de la Torre, P. Mutombo, J. Hellerstedt, J. Kopeček, P. Jelínek, M. Švec
    Nitrous oxide as an effective AFM tip functionalization: a comparative study
    Beilstein J. Nanotechnol. 10 (2019) 315 - 321.

  76. B. Cirera, B. de la Torre, D. Moreno, M. Ondráček, R. Zbořil, R. Miranda, P. Jelínek, D. Écija
    On-Surface Synthesis of Gold Porphyrin Derivatives via a Cascade of Chemical Interactions: Planarization, Self-Metalation, and Intermolecular Coupling
    Chem. Mater. 31 (2019) 3248 - 3256.

  77. L. Colazzo, M. S. G. Mohammed, A. Gallardo, Z. M. Abd El-Fattah, J. A. Pomposo, P. Jelínek, D. G. de Oteyza
    Controlling the stereospecific bonding motif of Au–thiolate links
    Nanoscale 11 (2019) 15567 - 15575.

  78. A. Gallardo, J. Fanfrlík, P. Hobza, P. Jelínek
    Nature of Binding in Planar Halogen–Benzene Assemblies and Their Possible Visualization in Scanning Probe Microscopy
    J. Phys. Chem. C 123 (2019) 8379 - 8386.

  79. J. Hellerstedt, A. Cahlík, O. Stetsovych, M. Švec, T. K. Shimizu, P. Mutombo, J. Klívar, I.G. Stará, P. Jelínek, I. Starý
    Aromatic Azide Transformation on the Ag(111) Surface Studied by Scanning Probe Microscopy
    Angew. Chem. Int. Ed. 58 (2019) 2266 - 2271.

  80. C. Karageorgaki, P. Mutombo, P. Jelinek, K. H. Ernst
    Chiral Surface from Achiral Ingredients: Modification of Cu(110) with Phthalic Acid
    J. Phys. Chem. C 123 (2019) 9121 - 9127.

  81. A. Mairena, J.I. Mendieta, O. Stetsovych, A. Terfort, I. G. Stará, I. Starý, P. Jelínek, K.-H. Ernst
    Heterochiral recognition among functionalized heptahelicenes on noble metal surfaces
    Chem. Commun. 55 (2019) 10595 - 10598.

  82. F. Queck, F. Albrecht, P. Mutombo, O. Krejčí, P. Jelinek, A. McLean, J. Repp
    Interface Dipoles of Ir(ppy)₃ on Cu(111)
    Nanoscale 11 (2019) 12695 - 12703.

  83. Jesús Redondo, Petr Lazar, Pavel Procházka, Stanislav Prusa, Jan Lachnitt, Benjamín Mallada, Aleš Cahlík, Jan Berger, Břetislav Šmíd, Lukáš Kormoš, Pavel Jelínek, Jan Čechal, Martin Švec
    Identification of Two-dimensional FeO2 Termination of Bulk Hematite ɑ-Fe2O3(0001) Surface
    J. Phys. Chem. C 123 (2019) 14312

  84. A. Sánchez-Grande, B. de la Torre, J. Santos, B. Cirera, K. Lauwaet, T. Chutora, S. Edalatmanesh, P. Mutombo, J. Rosen, R. Zbořil, R. Miranda, J. Bjork, P. Jelínek, N. Martín, D. Ecija
    On‐surface synthesis of ethynylene bridged anthracene polymers
    Angew. Chem. Int. Ed. 58 (2019) 6559 - 6563.

  85. M. Telychko J. Su, A. Gallardo Y. Gu, J. I. Mendieta, D. Qi, A. Tadich, Sh. Song, P. Lyu, Zh. Qiu, H. Fang, M. Joo Koh, J. Wu, P. Jelínek, J. Lu
    Strain‐Induced Isomerization in One‐Dimensional Metal–Organic Chains
    Angew. Chem. Int. Ed. 58 (2019) 18591 - 18597.

  86. J. Su, M. Telychko, P. Hu, G. Macam, P. Mutombo, H. Zhang, Y. Bao, F. Cheng, Z.-Q. Huang, Zh. Qiu, Sh. J. R. Tan, H. Lin, P. Jelínek, F.-Ch. Chuang, J. Wu, J. Lu
    Atomically precise bottom-up synthesis of π-extended [5]triangulene
    Science Advances 5 (2019) eaav7717-1

  87. N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo,M. Svec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
    On-Surface Bottom-Up Synthesis of Azine Derivatives DisplayingStrong Acceptor Behavior
    Angew. Chem. Int. Ed. 57 (2018) 8582 - 8586.

  88. J. Hellerstedt, A. Cahlík, M. Švec, B. de la Torre, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelinek
    On-surface structural and electronic properties of spontaneously formed Tb2Pc3 single molecule magnets
    Nanoscale 10 (2018) 15553 - 15563.

  89. C. Krull, M. Castelli, P. Hapala, D. Kumar, A. Tadich, M. Capsoni, M. T. Edmonds, J. Hellerstedt, S. A. Burke, P. Jelinek, A. Schiffrin
    Iron-based trinuclear metal-organic nanostructureson a surface with local charge accumulation
    Nat. Commun. 9 (2018) 3211(1) - 3211(7).

  90. B. de la Torre, M. Švec, P. Hapala, J. Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
    Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
    Nat. Commun. 9 (2018) 2831(1) - 2831(9).

  91. J. Peng, D. Cao, Z. He, J. Guo, P. Hapala, R. Ma, B. Cheng, J. Chen, W. J. Xie, X.-Zh. Li, P. Jelínek, L.-M. Xu, Y. Q. Gao, E.-G. Wang, Y. Jiang
    The effect of hydration number on the interfacial transport of sodium ions
    Nature 557 (2018) 701 - 705.

  92. J. Peng, J. Guo, P. Hapala, D. Cao, R. Ma, B. Cheng, L. Xu, M. Ondráček, P. Jelínek, E. Wang, Y. Jiang
    Weakly perturbative imaging of interfacial waterwith submolecular resolution by atomic forcemicroscopy
    Nat. Commun. 9 (2018) 122(1) - 122(7).

  93. F. Queck, O. Krejčí, P. Scheuerer, F. Bolland, M. Otyepka, P. Jelinek, J. Repp
    Bonding Motifs in Metal-Organic Compounds on Surfaces
    J. Am. Chem. Soc. 140 (2018) 12884 - 12889.

  94. J. Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
    Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
    J. Vac. Sci. Technol. A 36 (2018) 031401-1 - 031401-6.

  95. O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
    Large converse piezoelectric effect measured on a single molecule on a metallic surface
    J. Am. Chem. Soc. 140 (2018) 940 - 946.

  96. A. Charvátová Campbell, Pavel Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Meas. Sci. Technol. 28 (2017) 034005(1) - 034005(6).

  97. T. Chutora, J. Redondo, B. de la Torre, M. Švec, P. Jelínek, H. Vazquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein J. Nanotechnol. 8 (2017) 1073 - 1079.

  98. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    J. Phys.-Condens. Mat. 29 (2017) 343002(1) - 343002(18).

  99. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Phys. Rev. B 95 (2017) 045407(1) - 045407(9).

  100. B. de la Torre, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Phys. Rev. Lett. 119 (2017) 166001(1) - 166001(6).

  101. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413 - 8420.

  102. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nat. Commun. 8 (2017) 15155(1) - 15155(6).

  103. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nat. Chem. 9 (2017) 213 - 218.

  104. J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
    Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
    J. Phys. Chem. C 120 (2016) 21955 - 21961.

  105. N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelinek, I. Swart
    Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
    ACS Nano 10 (2016) 8517 - 8525.

  106. J. van der Lit, F. Di Cicco, P. Hapala, P. Jelinek, I. Swart
    Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
    Phys. Rev. Lett. 116 (2016) 096102-1 - 096102-5.

  107. P. Hapala, M. Svec, O. Stetsovych, N. J. van der Heijden, M. Ondracek ,J. van der Lit, P. Mutombo, I. Swart, P. Jelinek
    Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
    Nat. Commun. 7 (2016) 11560(1) - 11560(8).

  108. W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
    Tuning the conductance of benzene-based single-molecule junctions
    Org. Electron. 34 (2016) 254 - 261.

  109. N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
    Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
    J. Am. Chem. Soc. 138 (2016) 5585 - 5593.

  110. M. Ondráček, P. Hapala, P. Jelínek
    Charge-state dynamics in electrostatic force spectroscopy
    Nanotechnology 27 (2016) 274005(1) - 274005(13).

  111. O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
    Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
    J. Phys. Chem. Lett. 7 (2016) 1563 - 1569.

  112. J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
    Structural and Electronic Properties of Nitrogen-Doped Graphene
    Phys. Rev. Lett. 116 (2016) 126805(1) - 126805(6).

  113. V. Zobač, J.P. Lewis, P. Jelínek
    Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
    Nanotechnology 27 (2016) 285202(1) - 285202(8).

  114. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Phys. Rev. Lett. 115 (2015) 076101-1 - 076101-5.

  115. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686 - 3693.

  116. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Phys. Rev. Lett. 115 (2015) 136101(1) - 136101(5).

  117. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nat. Commun. 6 (2015) 7766(1) - 7766(6).

  118. Pablo Merino, Martin Švec, Jose Ignacio Martinez, Pingo Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, Pavel Jelinek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233 - 239.

  119. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelinek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    J. Phys.-Condens. Mat. 27 (2015) 134208(1) - 134208(11).

  120. Mykola Telychko, Jan Berger, Zsolt Majzik, Pavel Jelínek, Martin Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein J. Nanotechnol. 6 (2015) 901 - 906.

  121. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180 - 9187.

  122. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Lett. 15 (2015) 4356 - 4363.

  123. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    J. Phys.-Condens. Mat. 27 (2015) 175002(1) - 175002(11).

  124. P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
    Mechanism of high-resolution STM/AFM imaging with functionalized tips
    Phys. Rev. B 90 (2014) 085421(1) - 085421(9).

  125. P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
    Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
    Phys. Rev. Lett. 113 (2014) 226101(1) - 226101(5).

  126. K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
    Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
    Adv. Mater. Interf. 1 (2014) 1300042(1) - 1300042(9).

  127. P. Merino, M. Švec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
    Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
    Nat. Commun. 5 (2014) 3054(1) - 3054(9).

  128. J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
    Initial and secondary oxidation products on the Si(111)-(7x7) surface identified by atomic force microscopy and first principles calculations
    Appl. Phys. Lett. 104 (2014) 133107(1) - 133107(4).

  129. E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. Švec, Z. Majzik, A. B. McLean, P. Jelínek
    Identification of Surface Defects and Subsurface Dopants in a Delta-Doped System Using Simultaneous nc-AFM/STM and DFT
    J. Phys. Chem. C 118 (2014) 15744 - 15753.

  130. M. Švec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, V. Cháb, J. A. Martín Gago, P. Jelínek
    Silicene versus two-dimensional ordered silicide: Atomic and electronic structure of Si-(√19×√19)R23.4◦/Pt(111)
    Phys. Rev. B 89 (2014) 201412(1) - 201412(5).

  131. M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. Švec
    Achieving High-Quality Single-Atom Nitrogen Doping of Graphene/SiC(0001) by Ion Implantation and Subsequent Thermal Stabilization
    ACS Nano 8 (2014) 7318 - 7324.

  132. E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
    Calculation of non-adiabatic coupling vectors in a local-orbital basis set
    J. Chem. Phys. 138 (2013) 154106(1) - 154106(8).

  133. J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
    Characterization of the mechanical properties of qPlus sensors
    Beilstein J. Nanotechnol. 4 (2013) 1 - 9.

  134. P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
    Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
    Phys. Rev. B 87 (2013) 195420(1) - 195420(13).

  135. Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
    Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
    ACS Nano 7 (2013) 2686 - 2692.

  136. Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
    Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
    J. Phys.-Condens. Mat. 25 (2013) 225301(1) - 225301(6).

  137. P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
    Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
    Phys. Rev. B 88 (2013) 205406(1) - 205406(7).

  138. Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
    Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
    Phys. Rev. Lett. 111 (2013) 106803(1) - 106803(5).

  139. Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
    ACS Nano 7 (2013) 7370 - 7376.

  140. A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
    Atomic Structure Affects the Directional Dependence of Friction
    Phys. Rev. Lett. 111 (2013) 126103(1) - 126103(4).

  141. A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
    Phys. Rev. B 87 (2013) 155403(1) - 155403(10).

  142. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    J. Phys.-Condens. Mat. 24 (2012) 084001(1) - 084001(10).

  143. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein J. Nanotechnol. 3 (2012) 249 - 259.

  144. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    J. Phys.-Condens. Mat. 24 (2012) 084003(1) - 084003(7).

  145. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    J. Phys.-Condens. Mat. 24 (2012) 445003 - 445016.

  146. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969 - 6976.

  147. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Phys. Rev. B 86 (2012) 121407(R) - 121412(R).

  148. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelinek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Phys. Rev. B 85 (2012) 125416(1) - 125416(9).

  149. A. Campbellová, M. Ondráček, P. Pou, R. Pérez, P. Klapetek, P. Jelínek
    'Sub-atomic' resolution of non-contact atomic force microscope images induced by a heterogeneous tip structure: a density functional theory study
    Nanotechnology 22 (2011) 295710(1) - 295710(7).

  150. J.P. Lewis, P. Jelínek, J. Ortega, A.A. Demkov, D.G. Trabada, B. Haycock, H. Wang, G. Adams, J.K. Tomfohr, E. Abad, H. Wang, D.A. Drabold
    Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism
    phys. status solidi b 248 (2011) 1989 - 2007.

  151. Z. Majzik, W. Kamiński, A.J. Weymouth, M. Vondráček, V. Zobač, M. Švec, A. Berkó, A.B. McLean, K.C. Prince, P. Jelínek, and V. Cháb
    An Investigation of Ethylene Attachment to Si(111)–7 x 7 in the Restatom–Adatom Bridging Geometry: Electronic and Vibrational Properties
    J. Phys. Chem. C 115 (2011) 21791 - 21799.

  152. M. Ondráček, P. Pou, V. Rozsíval, C. González, P. Jelínek, R. Pérez
    Forces and Currents in Carbon Nanostructures: Are We Imaging Atoms?
    Phys. Rev. Lett. 106 (2011) 176101(1) - 176101(4).

  153. M. Ternes, C. González, Ch. P. Lutz, P. Hapala, F.J. Giessibel, P. Jelínek, A.J. Heinrich
    Interplay of Conductance, Force, and Structural Change in Metallic Point Contacts.
    Phys. Rev. Lett. 106 (2011) 016802(1) - 016802(4).

  154. W. Kaminski, W. Rozsíval, P. Jelínek
    Theoretical study of electronic and transport properties of PPy-Pt(111) and PPy-C(111):H interfaces
    J. Phys.-Condens. Mat. 22 (2010) 045003(1) - 045003(10).

  155. S. Lindsay, J. He, O. Sankey, P. Hapala, P. Jelínek, P. Zhang, S.Chang, S. Huang
    Recognition tunneling
    Nanotechnology 21 (2010) 262001(1) - 262001(12).

  156. C.Sánchez-Sánchez, C.González, P.Jelínek, J.Méndez, P.L.deAndres, J.A. Martín-Gago, M.F. López
    Understanding atomic-resolved STM images on TiO.2.(110)-(1x1) surface by DFT calculations.
    Nanotechnology 21 (2010) 405702(1) - 405702(10).

  157. R. Bechstein, C. González, J. Schütte, P. Jelínek, R. Pérez, A. Kühnle
    'All-inclusive' imaging of the rutile TiO.2.(110) surface using NC-AFM.
    Nanotechnology 20 (2009) 505703(1) - 505703(7).

  158. K. Košmider, A. Krupski, P.Jelínek, L. Jurczyszyn
    Atomic and electronic properties of the Pb/Mo(110) adsorption system.
    Phys. Rev. B 80 (2009) 115424(1) - 115424(7).

  159. P. Pou, S.A. Ghasemi, P. Jelínek, T. Lenosky, S. Goedecker, R. Perez
    Structure and stability of semiconductor tip apexes for atomic force microscopy.
    Nanotechnology 20 (2009) 264015-1 - 264015-10.

  160. S. Sadewasser, P.Jelínek, Ch.K. Fang, O.Custance, Y. Yamada, Y.Sugimoto, M.Abe, S.Morita
    New Insights on Atomic-Resolution Frequency-Modulation Kelvin-Probe Force-Microscopy Imaging of Semiconductors.
    Phys. Rev. Lett. 103 (2009) 266103(1) - 266103(4).

  161. M. Švec, V. Dudr, M. Vondráček, P. Jelínek, P. Mutombo, V. Cháb, F. Šutara, V. Matolín, K. Prince
    Intra-atomic charge re-organization at the Pb Si interface: Bonding mechanism at low cover.
    Surf. Sci. 603 (2009) 2861 - 2869.

  162. H. Vázquez, P.Jelínek, M. Brandbyge, A.P. Jauho, F. Flores
    Corrections to the density-functional theory electronic spectrum: copper phthalocyanine.
    Appl. Phys. A-Mater. 95 (2009) 257 - 263.

  163. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    Ab initio study of evolution of mechanical and transport properties of clean and contaminated Au nanowires along the deformation path.
    Phys. Rev. B 77 (2008) 115447(1) - 115447(11).

  164. P.Jelínek, M. Švec, P. Pou, R. Perez, V. Cháb
    Tip-Induced Reduction of the Resonant Tunneling Current on Semiconductor Surfaces.
    Phys. Rev. Lett. 101 (2008) 176101(1) - 176101(4).

  165. B. Pieczyrak, C. González, P. Jelínek, R. Peréz, J. Ortega, F. Flores
    Mechanical and electrical properties of stretched clean and H-contaminated Pd-nanowires.
    Nanotechnology 19 (2008) 335711(1) - 335711(8).

  166. Y.Sugimoto, P. Pou, O. Custance, P. Jelínek, M. Abe, R. Perez, S. Morita
    Complex Patterning by Vertical Interchange Atom Manipulation Using Atomic Force Microscopy.
    Science 322 (2008) 413 - 417.

  167. M. Švec, P. Jelínek, P. Shukrynau, C. González, V. Cháb, V. Drchal
    Local atomic and electronic structure of the Pb/Si(111) mosaic phase: STM and ab initio study.
    Phys. Rev. B 77 (2008) 125104(1) - 125104(8).

  168. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Comput Mater Sci 39 (2007) 759 - 766.

  169. Y.Sugimoto, P.Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Phys. Rev. Lett. 98 (2007) 106104-1 - 106104-4.

  170. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64 - 67.

  171. P.Jelínek, R.Pérez, J.Ortega, F.Flores
    Hydrogen dissociation over Au nanowires and the fractional conductance quantum
    Phys. Rev. Lett. 96, č.4 (2006) 046803/1 - 046803/4.

  172. N.Oyabu, P.Pou, Y.Sugimoto, P.Jelínek, M.Abe, S.Morita, R.Pérez, Ó.Custance
    Single atomic contact adhesion and dissipation in dynamic force microscopy
    Phys. Rev. Lett. 96 č.10 (2006) 106101/1 - 106101/4.

  173. Y.Sugimoto, P.Pou, O.Custance, P.Jelínek, S.Morita, R.Peréz, M.Abe.
    Real topography, atomic relaxations and short-range chemical interactions in atomic force microscopy: The case of the α-Sn/Si(111)-(√3 x √3) R30o surface.
    Phys. Rev. B 73 (2006) 205329-1 - 205329-9.

  174. J. M. Blanco, C. González, P. Jelínek, J. Ortega, F. Flores, R. Pérez, M. Rose, M. Salmeron, J. Méndez, J. Wintterlin, G. Ertl
    Origin of contrast in STM images of oxygen on Pd(111) and its dependence on tip structure and tunneling parameters
    Phys. Rev. B 71 (2005) 113402(1) - 113402(4).

  175. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    Universal behaviour in the final stage of the breaking process for metal nanowires
    Nanotechnology 16 (2005) 1023 - 1028.

  176. P. Jelínek, H. Wang, J. P. Lewis, O.F. Sankey, J.Ortega
    Multicenter approach to the exchange-correlation interactions in ab initio tight-binding methods
    Phys. Rev. B 71 (2005) 235101(1) - 235101(9).

  177. J. M. Blanco, C. Gonzáles, P. Jelínek, J. Ortega, F. Flores, R. Peréz
    First-principles simulations of STM images: From tuneling to the contact regime.
    Phys. Rev. B 70 (2004) 85405

  178. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23.

  179. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291.

  180. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136.

  181. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347.

  182. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403

  183. M. Mašín, Z. Chvoj, P. Jelínek, J. Heinonen
    Monte-Carlo simulation of the diffusion in a two barriers system.
    Surf. Sci. 516 (2002) 169 - 178.