2019

T. Chutora, B. de la Torre, P. Mutombo, J. Hellerstedt, J. Kopeček, P. Jelínek, M. Švec
Nitrous oxide as an effective AFM tip functionalization: a comparative study
Beilstein J. Nanotechnol. 10 (2019) 315 - 321.

B. Cirera, B. de la Torre, D. Moreno, M. Ondráček, R. Zbořil, R. Miranda, P. Jelínek, D. Écija
On-Surface Synthesis of Gold Porphyrin Derivatives via a Cascade of Chemical Interactions: Planarization, Self-Metalation, and Intermolecular Coupling
Chem. Mater. 31 (2019) 3248 - 3256.

A. Gallardo, J. Fanfrlík, P. Hobza, P. Jelínek
Nature of Binding in Planar Halogen–Benzene Assemblies and Their Possible Visualization in Scanning Probe Microscopy
J. Phys. Chem. C 123 (2019) 8379 - 8386.

J. Hellerstedt, A. Cahlík, O. Stetsovych, M. Švec, T. K. Shimizu, P. Mutombo, J. Klívar, I.G. Stará, P. Jelínek, I. Starý
Aromatic Azide Transformation on the Ag(111) Surface Studied by Scanning Probe Microscopy
Angew. Chem. Int. Ed. 58 (2019) 2266 - 2271.

Chrysanthi Karageorgaki, Pingo Mutombo, and Karl-Heinz Ernst
Interaction of Chiral and Achiral Dimethylsuccinic Acid Diastereomers with a Cu(110) Surface
J. Phys. Chem. C 123(4) (2019) 2329 - 2335.

C. Karageorgaki, P. Mutombo, P. Jelinek, K. H. Ernst
Chiral Surface from Achiral Ingredients: Modification of Cu(110) with Phthalic Acid
J. Phys. Chem. C 123 (2019) 9121 - 9127.

I. D. Marion, D. Čapeta, B. Pielić, F. Faraguna, A. Gallardo, P. Pou, B. Biel, N. Vujičić, M. Kralj
Atomic-scale defects and electronic properties of a transferred synthesized MoS2 monolayer
Nanotechnology 29 (2019) 305703(1) - 305703(12).

A. Sánchez-Grande, B. de la Torre, J. Santos, B. Cirera, K. Lauwaet, T. Chutora. S. Edalatmanesh. P. Mutombo, J. Rosen, R. Zbořil, R. Miranda, J. Bjork, P. Jelínek, N. Martín, D. Ecija
On‐surface synthesis of ethynylene bridged anthracene polymers
Angew. Chem. Int. Ed. 131 (2019) 6631 - 6635.


2018

Petr Brázda, Pingo Mutombo, Martin Ondráček, Cinthia Antunes Corrêa, Jaromír Kopeček, Lukáš Palatinus
Silicene-terminated surface of calcium and strontium disilicides: properties and comparison with bulk structures by computational methods
Philos. Mag. 98 (2018) 1131 - 1150.

N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo,M. Svec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
On-Surface Bottom-Up Synthesis of Azine Derivatives DisplayingStrong Acceptor Behavior
Angew. Chem. Int. Ed. 57 (2018) 8582 - 8586.

J. Hellerstedt, A. Cahlík, M. Švec, B. de la Torre, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelinek
On-surface structural and electronic properties of spontaneously formed Tb2Pc3 single molecule magnets
Nanoscale 10 (2018) 15553 - 15563.

C. Krull, M. Castelli, P. Hapala, D. Kumar, A. Tadich, M. Capsoni, M. T. Edmonds, J. Hellerstedt, S. A. Burke, P. Jelinek, A. Schiffrin
Iron-based trinuclear metal-organic nanostructureson a surface with local charge accumulation
Nat. Commun. 9 (2018) 3211(1) - 3211(7).

B. de la Torre, M. Švec, P. Hapala, J. Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
Nat. Commun. 9 (2018) 2831(1) - 2831(9).

A. Mairena, Ch. Wäckerlin, M. Wienke, K. Grenader, A. Terfort, K.-H. Ernst
Diastereoselective Ullmann Coupling to Bishelicenes by Surface Topochemistry
J. Am. Chem. Soc. 140 (2018) 15186 - 15189.

J. Peng, D. Cao, Z. He, J. Guo, P. Hapala, R. Ma, B. Cheng, J. Chen, W. J. Xie, X.-Zh. Li, P. Jelínek, L.-M. Xu, Y. Q. Gao, E.-G. Wang, Y. Jiang
The effect of hydration number on the interfacial transport of sodium ions
Nature 557 (2018) 701 - 705.

J. Peng, J. Guo, P. Hapala, D. Cao, R. Ma, B. Cheng, L. Xu, M. Ondráček, P. Jelínek, E. Wang, Y. Jiang
Weakly perturbative imaging of interfacial waterwith submolecular resolution by atomic forcemicroscopy
Nat. Commun. 9 (2018) 122(1) - 122(7).

F. Queck, O. Krejčí, P. Scheuerer, F. Bolland, M. Otyepka, P. Jelinek, J. Repp
Bonding Motifs in Metal-Organic Compounds on Surfaces
J. Am. Chem. Soc. 140 (2018) 12884 - 12889.

J. Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
J. Vac. Sci. Technol. A 36 (2018) 031401-1 - 031401-6.

O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
Large converse piezoelectric effect measured on a single molecule on a metallic surface
J. Am. Chem. Soc. 140 (2018) 940 - 946.

M. Todorović, O. Stetsovych, C. Moreno, T. K. Shimizu, O. Custance, R. Pérez
Pentacene/TiO2 Anatase Hybrid Interface Study by Scanning Probe Microscopy and First Principles Calculations
ACS Applied Materials and Interfaces 10 (2018) 34718 - 34726.


2017

A. Charvátová Campbell, Pavel Jelínek, P. Klapetek
Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
Meas. Sci. Technol. 28 (2017) 034005(1) - 034005(6).

T. Chutora, J. Redondo, B. de la Torre, M. Švec, P. Jelínek, H. Vazquez
Stable Au–C bonds to the substrate for fullerene-based nanostructures
Beilstein J. Nanotechnol. 8 (2017) 1073 - 1079.

P. Jelínek
High resolution SPM imaging of organic molecules with functionalized tips
J. Phys.-Condens. Mat. 29 (2017) 343002(1) - 343002(18).

O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
Principles and simulations of high-resolution STM imaging with a flexible tip apex
Phys. Rev. B 95 (2017) 045407(1) - 045407(9).

B. de la Torre, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
Phys. Rev. Lett. 119 (2017) 166001(1) - 166001(6).

J. LaRue, O. Krejčí, L. Yu, M. Beye , M. L. Ng, H. Öberg, H. Xin, G. Mercurio, S. Moeller, J. J. Turner, D. Nordlund, R. Coffee, M. P. Minitti, W. Wurth, L. G. M. Pettersson, H. Öström, A. Nilsson, F. Abild-Pedersen, H. Ogasawara
Real-Time Elucidation of Catalytic Pathways in CO Hydrogenation on Ru
J. Phys. Chem. Lett. 8 (2017) 3820 - 3825.

T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
ACS Nano 11 (2017) 8413 - 8420.

J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
Electronegativity determination of individual surface atoms by atomic force microscopy
Nat. Commun. 8 (2017) 15155(1) - 15155(6).

O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
From helical to planar chirality by on-surface chemistry
Nat. Chem. 9 (2017) 213 - 218.


2016

J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
J. Phys. Chem. C 120 (2016) 21955 - 21961.

N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelinek, I. Swart
Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
ACS Nano 10 (2016) 8517 - 8525.

J. van der Lit, F. Di Cicco, P. Hapala, P. Jelinek, I. Swart
Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
Phys. Rev. Lett. 116 (2016) 096102-1 - 096102-5.

P. Hapala, M. Svec, O. Stetsovych, N. J. van der Heijden, M. Ondracek ,J. van der Lit, P. Mutombo, I. Swart, P. Jelinek
Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
Nat. Commun. 7 (2016) 11560(1) - 11560(8).

W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
Tuning the conductance of benzene-based single-molecule junctions
Org. Electron. 34 (2016) 254 - 261.

N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
J. Am. Chem. Soc. 138 (2016) 5585 - 5593.

O. Krejčí, P. Matvija, P. Zimmermann, P. Sobotík, I. Ošťádal, P. Kocán
Chemisorption of Acetophenone on Si(111)-7 x 7. Polar Aromatic Molecule on Electronically Complex Surface
J. Phys. Chem. C 120 (2016) 9200 - 9206.

P.Mutombo, R. Gubo, A. Berko
Interaction of Gold with a Pinwheel TiO∼1.2 Film Formed on Rh(111) Facet: STM and DFT Studies
J. Phys. Chem. C 120 (23) (2016) 12917 - 12923.

M. Ondráček, P. Hapala, P. Jelínek
Charge-state dynamics in electrostatic force spectroscopy
Nanotechnology 27 (2016) 274005(1) - 274005(13).

O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
J. Phys. Chem. Lett. 7 (2016) 1563 - 1569.

J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
Structural and Electronic Properties of Nitrogen-Doped Graphene
Phys. Rev. Lett. 116 (2016) 126805(1) - 126805(6).

J. Sforzini, M. Telychko, O. Krejčí, M. Vondráček, M. Švec., F. C. Bocquet, F. S. Tautz
Transformation of metallic boron into substitutional dopants in graphene on 6H-SIC(0001)
Phys. Rev. B 93 (2016) 041302-1 - 041302-4.

V. Zobač, J.P. Lewis, P. Jelínek
Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
Nanotechnology 27 (2016) 285202(1) - 285202(8).


2015

F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
Phys. Rev. Lett. 115 (2015) 076101-1 - 076101-5.

María Arroyo-Hernández, Martin Švec, Celia Rogero, Carlos Briones, José Ángel Martín-Gago, José Luis Costa-Krämer
Structural modifications of gold thin films produced by thiol-derivatized single-stranded DNA immobilization
J. Phys.-Condens. Mat. 26 (5) (2015) 055010 - 055014.

J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
Small 11 (2015) 3686 - 3693.

M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
Charge Redistribution and Transport in Molecular Contacts
Phys. Rev. Lett. 115 (2015) 136101(1) - 136101(5).

K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
Nat. Commun. 6 (2015) 7766(1) - 7766(6).

P. Kocán, O.Krejčí, H. Tochihara
Anomalous structural evolution and √ 3 x√ 3  reconstruction of a clean Si(111) surface observed after thermal desorption of thallium
J. Vac. Sci. Technol. A 33 (2015) 021408-1 - 021408-8.

Pablo Merino, Martin Švec, Jose Ignacio Martinez, Pingo Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, Pavel Jelinek
Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
Langmuir 31 (1) (2015) 233 - 239.

César Moreno, Oleksandr Stetsovych, Tomoko K. Shimizu, Oscar Custance
Imaging Three-Dimensional Surface Objects with Submolecular Resolution by Atomic Force Microscopy
Nano Lett. 15 (2015) 2257 - 2262.

A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelinek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
J. Phys.-Condens. Mat. 27 (2015) 134208(1) - 134208(11).

O. Romanyuk, P. Mutombo, F. Grosse
Ab initio Study of Atomic Disorder on As-rich GaAs(111)A Surface
Surf. Sci. 641 (2015) 330 - 335.

Mykola Telychko, Jan Berger, Zsolt Majzik, Pavel Jelínek, Martin Švec
Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
Beilstein J. Nanotechnol. 6 (2015) 901 - 906.

M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
ACS Nano 9 (2015) 9180 - 9187.

Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
Nano Lett. 15 (2015) 4356 - 4363.

V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
J. Phys.-Condens. Mat. 27 (2015) 175002(1) - 175002(11).

(Total number of publications: 56)